PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 817aa    MW: 91083.3 Da    PI: 6.3901
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23112213199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011097999.1 112 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 202
                     99*****************************7444..44459************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011097999.1 203 KNQLLLGIRRA 213
                     9999****997 PP

2Auxin_resp119.72.2e-39238321183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gtv+g+sdldpvrWpnS+Wrs+k
  XP_011097999.1 238 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTVTGISDLDPVRWPNSHWRSVK 321
                     79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-4897241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41105227IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-21111212No hitNo description
PfamPF023622.3E-21112213IPR003340B3 DNA binding domain
SMARTSM010191.1E-23112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308112214IPR003340B3 DNA binding domain
PfamPF065072.9E-34238321IPR010525Auxin response factor
SuperFamilySSF542772.01E-7687767No hitNo description
PfamPF023091.5E-7689778IPR033389AUX/IAA domain
PROSITE profilePS5174524.028693777IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MKKCLNSELW HACAGPLVSL PTVGSRVVYF PQGHSEQVAA TTNKEVDAQI PNYPSLPPQL  60
ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKDAYLPVE LGTPSRQPTN YFCKTLTASD  120
TSTHGGFSVP RRAAEKVFPP LDFSQTPPAQ ELIARDLHDV EWKFRHIFRG QPKRHLLTTG  180
WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM PSSVLSSDSM HIGLLAAAAH  240
AAATNSCFTV FYNPRASPSE FVIPLSKYVK AVFHTRVSVG MRFRMLFETE ESSVRRYMGT  300
VTGISDLDPV RWPNSHWRSV KVGWDESTAG EKQPRVSLWE IEPLTTFPMY PSLFPLRLKR  360
PWYPGASSFQ DVSNEAINGL AWLRSGEQGF NSVNFQSVGM FPWIQQQRLD PMGSSNDFGQ  420
QYQAMLAGGL QNFGSGELPK HQLMHFQQPV HYLQHSGNHN PVSQQQQVVQ PSVSLHMLPA  480
QTQMLSDNMQ RPAEQQVDHQ SQEHLQQHNY QEAFLIQHDK LQQRQSLDIL SPSFTKSDFT  540
NSNSNFSAPT AQSCIQNMLG SICHEGNGNL LGFSRSGPQI LTEQPTQQSW VPKFAQSPVS  600
GCSNSKPIPS YSGKDGSIEQ ETCNLDVQNQ ALFGANIDSS GLLMHIGTSS VHADMSSMPL  660
GASGHQSPLY GYVQDSSDVL HSTGQVDQST PDHTFVKVYK TGSVGRSLDI GRFNSYQELR  720
QELGQMFGIK GLLEDPQRSG WQLVFVDREN DVLLLGDDPW EAFVNNVWYI KILSPEDVLR  780
LGKDEAESLS RSAVERIPND DTQNPVCGLP SLGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-159234248388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097997.10.0PREDICTED: auxin response factor 8-like isoform X1
RefseqXP_011097998.10.0PREDICTED: auxin response factor 8-like isoform X1
RefseqXP_011097999.10.0PREDICTED: auxin response factor 8-like isoform X2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A068U2C00.0A0A068U2C0_COFCA; Auxin response factor
STRINGSolyc02g037530.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8